Built-in schemas¶
Both built-in schemas are currently at schema_version: "0.2.1".
| Name | Description |
|---|---|
generic-cell-painting |
Vendor-neutral schema; does not assume any single upstream pipeline's exact column names. |
jump-cp |
A compatibility preset based on public JUMP Cell Painting Consortium metadata conventions. Not an official JUMP-endorsed AnnData schema — see JUMP compatibility derivation. |
Inspect them with the CLI:
cp-validate schema list
cp-validate schema show generic-cell-painting
cp-validate schema show jump-cp
Measurement families (v0.2.0+)¶
Both schemas recognize these CellProfiler families for FEAT002:
ObjectSkeleton, Math, Overlap, SizeShape, AreaOccupied,
ImageQuality, in addition to the classic AreaShape, Intensity,
Texture, and related families declared in the YAML resources.